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#               National Center for Biotechnology Information
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# the following tests invoke other tools, make sure those tools are present
if ( "linux" STREQUAL ${OS} AND BUILD_TOOLS_LOADERS AND BUILD_TOOLS_TEST_TOOLS AND BUILD_TOOLS_INTERNAL )

    ToolsRequired(sam-dump sam-factory bam-load kar)

    # specify the location of schema files in a local .kfg file, to be used by the tests here as needed
    add_test(NAME SamDumpTestSetup COMMAND sh -c "echo 'vdb/schema/paths = \"${SRC_INTERFACES_DIR}:${VDB_INCDIR}\"\n/LIBS/GUID=\"8test002-6ab7-41b2-bfd0-sam-dump-test\"' > tmp.kfg" WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} )
    set_tests_properties(SamDumpTestSetup PROPERTIES FIXTURES_SETUP SamDumpTest)

    add_test( NAME Test_sam_dump_verify_omit
        COMMAND
            ${CMAKE_COMMAND} -E env NCBI_SETTINGS=/
            ${CMAKE_COMMAND} -E env VDB_CONFIG=${CMAKE_CURRENT_SOURCE_DIR}
            ./verify_omit_qual.sh ${DIRTOTEST} ${BINDIR}
        WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} )
    set_tests_properties( Test_sam_dump_verify_omit PROPERTIES FIXTURES_REQUIRED SamDumpTest )

    add_test( NAME Test_sam_dump_star_quality
        COMMAND
            ${CMAKE_COMMAND} -E env NCBI_SETTINGS=/
            ${CMAKE_COMMAND} -E env VDB_CONFIG=${CMAKE_CURRENT_SOURCE_DIR}
            ./print_star_on_missing_qual.sh ${DIRTOTEST} ${BINDIR}
        WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} )
    set_tests_properties( Test_sam_dump_star_quality PROPERTIES FIXTURES_REQUIRED SamDumpTest )

endif()
