input_format_concept.hpp File Reference

Provides seqan3::sam_file_input_format and auxiliary classes. More...

#include <fstream>
#include <optional>
#include <string>
#include <vector>
#include <seqan3/alphabet/cigar/cigar.hpp>
#include <seqan3/alphabet/gap/gapped.hpp>
#include <seqan3/alphabet/nucleotide/dna4.hpp>
#include <seqan3/alphabet/nucleotide/dna5.hpp>
#include <seqan3/alphabet/quality/aliases.hpp>
#include <seqan3/alphabet/quality/phred42.hpp>
#include <seqan3/io/sam_file/header.hpp>
#include <seqan3/io/sam_file/input_options.hpp>
#include <seqan3/io/sam_file/sam_flag.hpp>
#include <seqan3/io/sam_file/sam_tag_dictionary.hpp>
#include <seqan3/utility/type_list/type_list.hpp>

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Classes
interface	seqan3::sam_file_input_format< t >
	The generic concept for alignment file input formats. More...

Namespaces
namespace	seqan3
	The main SeqAn3 namespace.

Detailed Description

Provides seqan3::sam_file_input_format and auxiliary classes.

Author

Svenja Mehringer <svenja.mehringer AT fu-berlin.de>