aliases.hpp File Reference

Provides aliases for qualified. More...

#include <seqan3/alphabet/concept.hpp>
#include <seqan3/alphabet/nucleotide/dna15.hpp>
#include <seqan3/alphabet/nucleotide/dna4.hpp>
#include <seqan3/alphabet/nucleotide/dna5.hpp>
#include <seqan3/alphabet/nucleotide/rna15.hpp>
#include <seqan3/alphabet/nucleotide/rna4.hpp>
#include <seqan3/alphabet/nucleotide/rna5.hpp>
#include <seqan3/alphabet/quality/concept.hpp>
#include <seqan3/alphabet/quality/phred42.hpp>
#include <seqan3/alphabet/quality/qualified.hpp>

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Namespaces
namespace	seqan3
	The main SeqAn3 namespace.

Typedefs
using	seqan3::dna15q = qualified<dna15, phred42>
	An alphabet that stores a seqan3::dna15 letter and an seqan3::qualified letter at each position.
using	seqan3::dna4q = qualified<dna4, phred42>
	An alphabet that stores a seqan3::dna4 letter and an seqan3::phred42 letter at each position.
using	seqan3::dna5q = qualified<dna5, phred42>
	An alphabet that stores a seqan3::dna5 letter and an seqan3::phred42 letter at each position.
using	seqan3::rna15q = qualified<rna15, phred42>
	An alphabet that stores a seqan3::rna15 letter and an seqan3::qualified letter at each position.
using	seqan3::rna4q = qualified<rna4, phred42>
	An alphabet that stores a seqan3::rna4 letter and an seqan3::phred42 letter at each position.
using	seqan3::rna5q = qualified<rna5, phred42>
	An alphabet that stores a seqan3::rna5 letter and an seqan3::phred42 letter at each position.

Detailed Description

Provides aliases for qualified.

Author

Hannes Hauswedell <hannes.hauswedell AT fu-berlin.de>