Class CIFWriter

java.lang.Object
org.jmol.adapter.writers.XtlWriter
org.jmol.adapter.writers.CIFWriter
All Implemented Interfaces:
JmolWriter
Direct Known Subclasses:
FSG2SCIFConverter
public class CIFWriter extends XtlWriter implements JmolWriter
A basic CIF writer only.

  • Field Details

    • vwr

      protected Viewer vwr

    • oc

      protected OC oc

    • data

      protected Object[] data

    • isP1

      protected boolean isP1

    • isCIF2

      protected boolean isCIF2

    • modelIndex

      protected short modelIndex

    • haveCustom

      protected boolean haveCustom

    • uc

      protected SymmetryInterface uc

    • bsOut

      protected BS bsOut

    • atoms

      protected Atom[] atoms

    • nops

      protected int nops

    • atomLabels

      protected String[] atomLabels

    • jmol_atoms

      protected SB jmol_atoms

    • modelInfo

      protected Map<String,Object> modelInfo

  • Constructor Details

    • CIFWriter

      public CIFWriter()

  • Method Details

    • set

      public void set(Viewer viewer, OC oc, Object[] data)
      Specified by:
      set in interface JmolWriter

    • write

      public String write(BS bs)
      Specified by:
      write in interface JmolWriter

    • prepareAtomSet

      protected void prepareAtomSet(BS bs)

    • writeHeader

      protected void writeHeader(SB sb)

    • writeOperations

      protected void writeOperations(SB sb)

    • writeParams

      protected void writeParams(SB sb)

    • writeAtomSite

      protected int writeAtomSite(SB sb)

    • appendField

      protected static void appendField(SB sb, String val, int width)

    • append3

      protected void append3(SB sb, T3 a)

    • writeChecked

      protected boolean writeChecked(SB output, String val)
      see https://github.com/rcsb/ciftools-java/blob/master/src/main/java/org/rcsb/cif/text/TextCifWriter.java
      Parameters:
      output -
      val -
      Returns:
      true if multiline

    • writeMultiline

      protected void writeMultiline(SB output, String val)

    • appendKey

      protected SB appendKey(SB sb, String key, int width)

    • toString

      public String toString()
      Overrides:
      toString in class Object