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Description Nested Class Summary Enum Constant Summary Method Summary Enum Constant Details
bonding_vdw_cutoff min_mesh_spacing dot_density dot_mode solvent_radius sel_counter bg_rgb ambient direct reflect light power antialias cavity_cull gl_ambient single_image movie_delay ribbon_power ribbon_power_b ribbon_sampling ribbon_radius stick_radius hash_max orthoscopic spec_reflect spec_power sweep_angle sweep_speed dot_hydrogens dot_radius ray_trace_frames cache_frames trim_dots cull_spheres test1 test2 surface_best surface_normal surface_quality surface_proximity normal_workaround stereo_angle stereo_shift line_smooth line_width half_bonds stick_quality stick_overlap stick_nub all_states pickable auto_show_lines idle_delay no_idle fast_idle slow_idle rock_delay dist_counter dash_length dash_gap auto_zoom overlay text button_mode valence nonbonded_size label_color ray_trace_fog spheroid_scale ray_trace_fog_start spheroid_smooth spheroid_fill auto_show_nonbonded cache_display mesh_radius backface_cull gamma dot_width auto_show_selections auto_hide_selections selection_width selection_overlay static_singletons max_triangles depth_cue specular shininess sphere_quality fog isomesh_auto_state mesh_width cartoon_sampling cartoon_loop_radius cartoon_loop_quality cartoon_power cartoon_power_b cartoon_rect_length cartoon_rect_width internal_gui_width internal_gui cartoon_oval_length cartoon_oval_width cartoon_oval_quality cartoon_tube_radius cartoon_tube_quality cartoon_debug ribbon_width dash_width dash_radius cgo_ray_width_scale line_radius cartoon_round_helices cartoon_refine_normals cartoon_flat_sheets cartoon_smooth_loops cartoon_dumbbell_length cartoon_dumbbell_width cartoon_dumbbell_radius cartoon_fancy_helices cartoon_fancy_sheets ignore_pdb_segi ribbon_throw cartoon_throw cartoon_refine cartoon_refine_tips cartoon_discrete_colors normalize_ccp4_maps surface_poor internal_feedback cgo_line_width cgo_line_radius logging robust_logs log_box_selections log_conformations valence_size surface_miserable ray_opaque_background transparency ray_texture ray_texture_settings suspend_updates full_screen surface_mode surface_color mesh_mode mesh_color auto_indicate_flags surface_debug ray_improve_shadows smooth_color_triangle ray_default_renderer field_of_view reflect_power preserve_chempy_ids sphere_scale two_sided_lighting secondary_structure auto_remove_hydrogens raise_exceptions stop_on_exceptions sculpting auto_sculpt sculpt_vdw_scale sculpt_vdw_scale14 sculpt_vdw_weight sculpt_vdw_weight14 sculpt_bond_weight sculpt_angl_weight sculpt_pyra_weight sculpt_plan_weight sculpting_cycles sphere_transparency sphere_color sculpt_field_mask sculpt_hb_overlap sculpt_hb_overlap_base legacy_vdw_radii sculpt_memory connect_mode cartoon_cylindrical_helices cartoon_helix_radius connect_cutoff save_pdb_ss sculpt_line_weight fit_iterations fit_tolerance batch_prefix stereo_mode cgo_sphere_quality pdb_literal_names wrap_output fog_start state frame ray_shadows ribbon_trace_atoms security stick_transparency ray_transparency_shadows session_version_check ray_transparency_specular stereo_double_pump_mono sphere_solvent mesh_quality mesh_solvent dot_solvent ray_shadow_fudge ray_triangle_fudge debug_pick dot_color mouse_limit mouse_scale transparency_mode clamp_colors pymol_space_max_red pymol_space_max_green pymol_space_max_blue pymol_space_min_factor roving_origin roving_lines roving_sticks roving_spheres roving_labels roving_delay roving_selection roving_byres roving_ribbon roving_cartoon roving_polar_contacts roving_polar_cutoff roving_nonbonded float_labels roving_detail roving_nb_spheres ribbon_color cartoon_color ribbon_smooth auto_color auto_color_next ray_interior_color cartoon_highlight_color coulomb_units_factor coulomb_dielectric ray_interior_shadows ray_interior_texture roving_map1_name roving_map2_name roving_map3_name roving_map1_level roving_map2_level roving_map3_level roving_isomesh roving_isosurface scenes_changed gaussian_b_adjust pdb_standard_order cartoon_smooth_first cartoon_smooth_last cartoon_smooth_cycles cartoon_flat_cycles max_threads show_progress use_display_lists cache_memory simplify_display_lists retain_order pdb_hetatm_sort pdb_use_ter_records cartoon_trace_atoms ray_oversample_cutoff gaussian_resolution gaussian_b_floor sculpt_nb_interval sculpt_tors_weight sculpt_tors_tolerance stick_ball stick_ball_ratio stick_fixed_radius cartoon_transparency dash_round_ends h_bond_max_angle h_bond_cutoff_center h_bond_cutoff_edge h_bond_power_a h_bond_power_b h_bond_cone ss_helix_psi_target ss_helix_psi_include ss_helix_psi_exclude ss_helix_phi_target ss_helix_phi_include ss_helix_phi_exclude ss_strand_psi_target ss_strand_psi_include ss_strand_psi_exclude ss_strand_phi_target ss_strand_phi_include ss_strand_phi_exclude movie_loop pdb_retain_ids pdb_no_end_record cgo_dot_width cgo_dot_radius defer_updates normalize_o_maps swap_dsn6_bytes pdb_insertions_go_first roving_origin_z roving_origin_z_cushion specular_intensity overlay_lines ray_transparency_spec_cut internal_prompt normalize_grd_maps ray_blend_colors ray_blend_red ray_blend_green ray_blend_blue png_screen_gamma png_file_gamma editor_label_fragments internal_gui_control_size auto_dss transparency_picking_mode virtual_trackball pdb_reformat_names_mode ray_pixel_scale label_font_id pdb_conect_all button_mode_name surface_type dot_normals session_migration mesh_normals mesh_type dot_lighting mesh_lighting surface_solvent triangle_max_passes ray_interior_reflect internal_gui_mode surface_carve_selection surface_carve_state surface_carve_cutoff surface_clear_selection surface_clear_state surface_clear_cutoff surface_trim_cutoff surface_trim_factor ray_max_passes active_selections ray_transparency_contrast seq_view mouse_selection_mode seq_view_label_spacing seq_view_label_start seq_view_format seq_view_location seq_view_overlay auto_classify_atoms cartoon_nucleic_acid_mode seq_view_color seq_view_label_mode surface_ramp_above_mode stereo wizard_prompt_mode coulomb_cutoff slice_track_camera slice_height_scale slice_height_map slice_grid slice_dynamic_grid slice_dynamic_grid_resolution pdb_insure_orthogonal ray_direct_shade stick_color cartoon_putty_radius cartoon_putty_quality cartoon_putty_scale_min cartoon_putty_scale_max cartoon_putty_scale_power cartoon_putty_range cartoon_side_chain_helper surface_optimize_subsets multiplex texture_fonts pqr_workarounds animation animation_duration scene_animation line_stick_helper ray_orthoscopic ribbon_side_chain_helper selection_width_max selection_width_scale scene_current_name presentation presentation_mode pdb_truncate_residue_name scene_loop sweep_mode sweep_phase scene_restart_movie_delay mouse_restart_movie_delay angle_size angle_label_position dihedral_size dihedral_label_position defer_builds_mode seq_view_discrete_by_state scene_animation_duration wildcard atom_name_wildcard ignore_case presentation_auto_quit editor_auto_dihedral presentation_auto_start validate_object_names unused_boolean_def_true auto_show_spheres sphere_mode sphere_point_max_size sphere_point_size pdb_honor_model_number rank_assisted_sorts ribbon_nucleic_acid_mode cartoon_ring_mode cartoon_ring_width cartoon_ring_color cartoon_ring_finder cartoon_tube_cap cartoon_loop_cap nvidia_bugs image_dots_per_inch opaque_background draw_frames show_alpha_checker matrix_mode editor_auto_origin session_file cgo_transparency legacy_mouse_zoom auto_number_selections sculpt_vdw_vis_mode sculpt_vdw_vis_min sculpt_vdw_vis_mid sculpt_vdw_vis_max cartoon_ladder_mode cartoon_ladder_radius cartoon_ladder_color cartoon_nucleic_acid_color cartoon_ring_transparency label_size spec_direct light_count light2 light3 hide_underscore_names selection_round_points distance_exclusion h_bond_exclusion label_shadow_mode light4 light5 light6 light7 label_outline_color ray_trace_mode ray_trace_gain selection_visible_only label_position ray_trace_depth_factor ray_trace_slope_factor ray_trace_disco_factor ray_shadow_decay_factor ray_interior_mode ray_legacy_lighting sculpt_auto_center pdb_discrete_chains pdb_unbond_cations sculpt_tri_scale sculpt_tri_weight sculpt_tri_min sculpt_tri_max sculpt_tri_mode pdb_echo_tags connect_bonded spec_direct_power light8 light9 ray_shadow_decay_range spec_count sculpt_min_scale sculpt_min_weight sculpt_min_min sculpt_min_max sculpt_max_scale sculpt_max_weight sculpt_max_min sculpt_max_max surface_circumscribe sculpt_avd_weight sculpt_avd_gap sculpt_avd_range sculpt_avd_excl async_builds fetch_path cartoon_ring_radius ray_color_ramps ray_hint_camera ray_hint_shadow stick_valence_scale seq_view_alignment seq_view_unaligned_mode seq_view_unaligned_color seq_view_fill_char seq_view_fill_color seq_view_label_color surface_carve_normal_cutoff trace_atoms_mode session_changed ray_clip_shadows mouse_wheel_scale nonbonded_transparency ray_spec_local line_color ray_label_specular mesh_skip label_digits label_distance_digits label_angle_digits label_dihedral_digits surface_negative_visible surface_negative_color mesh_negative_visible mesh_negative_color group_auto_mode group_full_member_names gradient_max_length gradient_min_length gradient_min_slope gradient_normal_min_dot gradient_step_size gradient_spacing gradient_symmetry ray_trace_color group_arrow_prefix suppress_hidden session_compression movie_fps ray_transparency_oblique ray_trace_trans_cutoff ray_trace_persist_cutoff ray_transparency_oblique_power ray_scatter h_bond_from_proton auto_copy_images moe_separate_chains transparency_global_sort hide_long_bonds auto_rename_duplicate_objects pdb_hetatm_guess_valences ellipsoid_quality cgo_ellipsoid_quality movie_animate_by_frame ramp_blend_nearby_colors auto_defer_builds ellipsoid_probability ellipsoid_scale ellipsoid_color ellipsoid_transparency movie_rock cache_mode dash_color angle_color dihedral_color grid_mode cache_max grid_slot grid_max cartoon_putty_transform rock cone_quality pdb_formal_charges ati_bugs geometry_export_mode mouse_grid mesh_cutoff mesh_carve_selection mesh_carve_state mesh_carve_cutoff mesh_clear_selection mesh_clear_state mesh_clear_cutoff mesh_grid_max session_cache_optimize sdof_drag_scale scene_buttons_mode scene_buttons map_auto_expand_sym image_copy_always max_ups auto_overlay stick_ball_color stick_h_scale sculpt_pyra_inv_weight keep_alive fit_kabsch stereo_dynamic_strength dynamic_width dynamic_width_factor dynamic_width_min dynamic_width_max draw_mode clean_electro_mode valence_mode show_frame_rate movie_panel mouse_z_scale movie_auto_store movie_auto_interpolate movie_panel_row_height scene_frame_mode surface_cavity_mode surface_cavity_radius surface_cavity_cutoff motion_power motion_bias motion_simple motion_linear motion_hand pdb_ignore_conect editor_bond_cycle_mode movie_quality label_anchor fetch_host dynamic_measures neighbor_cutoff heavy_neighbor_cutoff polar_neighbor_cutoff surface_residue_cutoff surface_use_shader cartoon_use_shader stick_use_shader line_use_shader sphere_use_shader use_shaders shader_path volume_bit_depth volume_color volume_layers volume_data_range auto_defer_atom_count default_refmac_names default_phenix_names default_phenix_no_fill_names default_buster_names default_fofc_map_rep default_2fofc_map_rep atom_type_format autoclose_dialogs bg_gradient bg_rgb_top bg_rgb_bottom ray_volume ribbon_transparency state_counter_mode cgo_use_shader cgo_shader_ub_color cgo_shader_ub_normal cgo_lighting mesh_use_shader stick_debug cgo_debug stick_round_nub stick_good_geometry stick_as_cylinders mesh_as_cylinders line_as_cylinders ribbon_as_cylinders ribbon_use_shader excl_display_lists_shaders dash_use_shader dash_as_cylinders nonbonded_use_shader nonbonded_as_cylinders cylinders_shader_filter_faces nb_spheres_size nb_spheres_quality nb_spheres_use_shader render_as_cylinders alignment_as_cylinders cartoon_nucleic_acid_as_cylinders cgo_shader_ub_flags offscreen_rendering_for_antialiasing offscreen_rendering_multiplier cylinder_shader_ff_workaround surface_color_smoothing surface_color_smoothing_threshold dot_use_shader dot_as_spheres ambient_occlusion_mode ambient_occlusion_scale ambient_occlusion_smooth smooth_half_bonds anaglyph_mode edit_light suspend_undo suspend_undo_atom_count bg_image_filename bg_image_mode bg_image_tilesize bg_image_linear label_placement_offset dump_binary
Method Details
values() valueOf(String) getName(int)
Enum Constant Summary
Enum Constants
Method Summary
All Methods Static Methods Concrete Methods
Returns the enum constant of this class with the specified name.
Returns an array containing the constants of this enum class, in
the order they are declared.
Methods inherited from class Enum
clone , compareTo , describeConstable , equals , finalize , getDeclaringClass , hashCode , name , ordinal , toString , valueOf