Uses of Class org.jmol.adapter.readers.cif.CifReader (Jmol 16.3.55 API)

Packages that use CifReader

Package

Description

org.jmol.adapter.readers.cif

Uses of CifReader in org.jmol.adapter.readers.cif

Subclasses of CifReader in org.jmol.adapter.readers.cif

Modifier and Type

Class

Description

class

BCIFReader

A very simple Binary CIF file reader extention of MMCifReader extends CifReader.

class

Cif2Reader

Preliminary Cif2 reader.

class

MMCifReader

mmCIF files are recognized prior to class creation.

class

MMTFReader

JmolData RCSB MMTF (macromolecular transmission format) file reader see https://github.com/rcsb/mmtf/blob/master/spec.md Note added 2024.01.19 Jose Duarte 2:03 PM (email) to MMTF-Users From July 2024 the PDB file archive will not be offered in the compressed MMTF format anymore.

Methods in org.jmol.adapter.readers.cif with parameters of type CifReader

Modifier and Type

Method

Description

TopoCifParser

TopoCifParser.setReader(CifReader reader)

filter "TOPOS_TYPES=hb" will only load hydrogen bonds; options include v, vw, and hb