jme.JME

All Implemented Interfaces:: KeyListener, MouseListener, MouseMotionListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible

Direct Known Subclasses:: JmolJME

public class JME extends JPanel implements MouseListener, KeyListener, MouseMotionListener

See Also:

Nested Class Summary

Nested classes/interfaces inherited from class JPanel
JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class JComponent
JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class Container
Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class Component
Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy
Field Summary

Fields

Modifier and Type

Field

Description

protected boolean

afterClear

protected boolean

allHs

int[]

apointx

int[]

apointy

protected boolean

application

protected boolean

autoez

protected boolean

autonumber

int[]

bpointx

int[]

bpointy

protected boolean

bwMode

protected boolean

canonize

protected boolean

depict

protected boolean

depictBorder

protected boolean

doMenu

protected boolean

doTags

protected boolean

dyMode

protected boolean

embedded

protected String

infoText

protected boolean

jmeh

protected boolean

keepHydrogens

protected boolean

markUsed

JMEmol

mol

protected JMEmol[]

mols

protected boolean

mouseShift

protected boolean

movePossible

protected boolean

multipart

JFrame

myFrame

protected boolean

newMolecule

int

nmols

protected boolean

nocenter

protected boolean

number

protected boolean

polarnitro

protected boolean

query

protected boolean

rButton

protected boolean

reaction

protected boolean

relativeStereo

protected boolean

revertStereo

protected boolean

runsmi

protected boolean

showAtomNumbers

protected boolean

showHydrogens

protected boolean

star

protected boolean

stereo

protected boolean

webme

protected boolean

writemi

protected boolean

writemol

protected boolean

writesmi

protected boolean

xButton

Fields inherited from class JComponent
listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class Component
accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH
Constructor Summary

Constructors

Constructor

Description

JME()

JME(JFrame frame, boolean embedded)
Method Summary

Modifier and Type

Method

Description

void

activateQuery()

void

clear()

protected boolean

doAction()

protected boolean

doMouseAtomAction()

protected void

doMouseBondAction()

protected void

doNewMoleculeAction(int x, int y)

Color

getColor()

void

getPreviousMolecule()

boolean

hasPrevious()

protected void

initialize()

String

jmeFile()

boolean

keyDown(KeyEvent e, int key)

void

keyPressed(KeyEvent e)

void

keyReleased(KeyEvent e)

void

keyTyped(KeyEvent e)

static void

main(String[] args)

String

molFile()

void

mouseClicked(MouseEvent e)

boolean

mouseDown(MouseEvent e, int x, int y)

boolean

mouseDrag(MouseEvent e, int x, int y)

void

mouseDragged(MouseEvent e)

void

mouseEntered(MouseEvent e)

void

mouseExited(MouseEvent e)

boolean

mouseMove(MouseEvent e, int x, int y)

void

mouseMoved(MouseEvent e)

void

mousePressed(MouseEvent e)

void

mouseReleased(MouseEvent e)

boolean

mouseUp(MouseEvent e, int x, int y)

String

nonisomericSmiles()

void

options(String parameters)

void

paint(Graphics g)

protected void

paintMolecularArea(BufferedImage img)

void

ping()

void

readMolecule(String molecule)

void

readMolFile(String s)

void

reset()

void

setFrame(JFrame frame)

protected boolean

setMol(boolean checkMultipart)

void

setSubstituent(String s)

void

setTemplate(String t, String name)

void

setText(String text)

void

showAtomNumbers()

String

smiles()

void

start()

void

stop()

void

update(Graphics g)

protected void

updateMark(int n)

Methods inherited from class JPanel
getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class JComponent
addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction

Methods inherited from class Container
add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details
- myFrame
  
  public JFrame myFrame
- application
  
  protected boolean application
- infoText
  
  protected String infoText
- bwMode
  
  protected boolean bwMode
- runsmi
  
  protected boolean runsmi
- canonize
  
  protected boolean canonize
- stereo
  
  protected boolean stereo
- multipart
  
  protected boolean multipart
- xButton
  
  protected boolean xButton
- rButton
  
  protected boolean rButton
- showHydrogens
  
  protected boolean showHydrogens
- query
  
  protected boolean query
- reaction
  
  protected boolean reaction
- autoez
  
  protected boolean autoez
- writesmi
  
  protected boolean writesmi
- writemi
  
  protected boolean writemi
- writemol
  
  protected boolean writemol
- number
  
  protected boolean number
- star
  
  protected boolean star
- autonumber
  
  protected boolean autonumber
- jmeh
  
  protected boolean jmeh
- depict
  
  protected boolean depict
- depictBorder
  
  protected boolean depictBorder
- keepHydrogens
  
  protected boolean keepHydrogens
- nocenter
  
  protected boolean nocenter
- polarnitro
  
  protected boolean polarnitro
- showAtomNumbers
  
  protected boolean showAtomNumbers
- doMenu
  
  protected boolean doMenu
- movePossible
  
  protected boolean movePossible
- newMolecule
  
  protected boolean newMolecule
- afterClear
  
  protected boolean afterClear
- mouseShift
  
  protected boolean mouseShift
- dyMode
  
  protected boolean dyMode
- mol
  
  public JMEmol mol
- nmols
  
  public int nmols
- mols
  
  protected JMEmol[] mols
- doTags
  
  protected boolean doTags
- webme
  
  protected boolean webme
- apointx
  
  public int[] apointx
- apointy
  
  public int[] apointy
- bpointx
  
  public int[] bpointx
- bpointy
  
  public int[] bpointy
- revertStereo
  
  protected boolean revertStereo
- relativeStereo
  
  protected boolean relativeStereo
- allHs
  
  protected boolean allHs
- markUsed
  
  protected boolean markUsed
- embedded
  
  protected boolean embedded
Constructor Details
- JME
  
  public JME()
- JME
  
  public JME(JFrame frame, boolean embedded)
Method Details
- setFrame
  
  public void setFrame(JFrame frame)
- main
  
  public static void main(String[] args)
- getColor
  
  public Color getColor()
- activateQuery
  
  public void activateQuery()
- initialize
  
  protected void initialize()
- start
  
  public void start()
- stop
  
  public void stop()
- ping
  
  public void ping()
- smiles
  
  public String smiles()
- nonisomericSmiles
  
  public String nonisomericSmiles()
- reset
  
  public void reset()
- clear
  
  public void clear()
- jmeFile
  
  public String jmeFile()
- readMolecule
  
  public void readMolecule(String molecule)
- setTemplate
  
  public void setTemplate(String t, String name)
- molFile
  
  public String molFile()
- readMolFile
  
  public void readMolFile(String s)
- setMol
  
  protected boolean setMol(boolean checkMultipart)
- setSubstituent
  
  public void setSubstituent(String s)
- options
  
  public void options(String parameters)
- setText
  
  public void setText(String text)
- showAtomNumbers
  
  public void showAtomNumbers()
- hasPrevious
  
  public boolean hasPrevious()
- getPreviousMolecule
  
  public void getPreviousMolecule()
- paint
  
  public void paint(Graphics g)
  
  Overrides:
  
  paint in class JComponent
- update
  
  public void update(Graphics g)
  
  Overrides:
  
  update in class JComponent
- paintMolecularArea
  
  protected void paintMolecularArea(BufferedImage img)
- mouseDown
  
  public boolean mouseDown(MouseEvent e, int x, int y)
- doAction
  
  protected boolean doAction()
- doNewMoleculeAction
  
  protected void doNewMoleculeAction(int x, int y)
- doMouseBondAction
  
  protected void doMouseBondAction()
- doMouseAtomAction
  
  protected boolean doMouseAtomAction()
- mouseUp
  
  public boolean mouseUp(MouseEvent e, int x, int y)
  
  Parameters:
  
  e -
  
  x -
  
  y -
  
  Returns:
  
  ignored
- mouseDrag
  
  public boolean mouseDrag(MouseEvent e, int x, int y)
- mouseMove
  
  public boolean mouseMove(MouseEvent e, int x, int y)
  
  Parameters:
  
  e -
  
  x -
  
  y -
  
  Returns:
  
  ignored
- keyDown
  
  public boolean keyDown(KeyEvent e, int key)
- updateMark
  
  protected void updateMark(int n)
- mouseDragged
  
  public void mouseDragged(MouseEvent e)
  
  Specified by:
  
  mouseDragged in interface MouseMotionListener
- mouseMoved
  
  public void mouseMoved(MouseEvent e)
  
  Specified by:
  
  mouseMoved in interface MouseMotionListener
- keyTyped
  
  public void keyTyped(KeyEvent e)
  
  Specified by:
  
  keyTyped in interface KeyListener
- keyPressed
  
  public void keyPressed(KeyEvent e)
  
  Specified by:
  
  keyPressed in interface KeyListener
- keyReleased
  
  public void keyReleased(KeyEvent e)
  
  Specified by:
  
  keyReleased in interface KeyListener
- mouseClicked
  
  public void mouseClicked(MouseEvent e)
  
  Specified by:
  
  mouseClicked in interface MouseListener
- mousePressed
  
  public void mousePressed(MouseEvent e)
  
  Specified by:
  
  mousePressed in interface MouseListener
- mouseReleased
  
  public void mouseReleased(MouseEvent e)
  
  Specified by:
  
  mouseReleased in interface MouseListener
- mouseEntered
  
  public void mouseEntered(MouseEvent e)
  
  Specified by:
  
  mouseEntered in interface MouseListener
- mouseExited
  
  public void mouseExited(MouseEvent e)
  
  Specified by:
  
  mouseExited in interface MouseListener

Class JME

Nested Class Summary

Nested classes/interfaces inherited from class JPanel

Nested classes/interfaces inherited from class JComponent

Nested classes/interfaces inherited from class Container

Nested classes/interfaces inherited from class Component

Field Summary

Fields inherited from class JComponent

Fields inherited from class Component

Fields inherited from interface ImageObserver

Constructor Summary

Method Summary

Methods inherited from class JPanel

Methods inherited from class JComponent

Methods inherited from class Container

Methods inherited from class Component

Methods inherited from class Object

Field Details

myFrame

application

infoText

bwMode

runsmi

canonize

stereo

multipart

xButton

rButton

showHydrogens

query

reaction

autoez

writesmi

writemi

writemol

number

star

autonumber

jmeh

depict

depictBorder

keepHydrogens

nocenter

polarnitro

showAtomNumbers

doMenu

movePossible

newMolecule

afterClear

mouseShift

dyMode

mol

nmols

mols

doTags

webme

apointx

apointy

bpointx

bpointy

revertStereo

relativeStereo

allHs

markUsed

embedded

Constructor Details

JME

JME

Method Details

setFrame

main

getColor

activateQuery

initialize

start

stop

ping

smiles

nonisomericSmiles

reset