Uses of Class
javajs.util.V3
Packages that use V3
Package
Description
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Uses of V3 in com.sparshui.common
Methods in com.sparshui.common that return V3 -
Uses of V3 in javajs.api
Methods in javajs.api with parameters of type V3Modifier and TypeMethodDescriptionvoidEigenInterface.fillFloatArrays(V3[] eigenVectors, float[] eigenValues) -
Uses of V3 in javajs.util
Fields in javajs.util declared as V3Methods in javajs.util that return V3Modifier and TypeMethodDescriptionQuat.get3dProjection(V3 v3d) Quat.getNormal()Quat.getNormalDirected(V3 v0) Quat.getVector(int i) Quat.getVectorScaled(int i, float scale) static V3V3.new3(float x, float y, float z) static V3static V3Methods in javajs.util with parameters of type V3Modifier and TypeMethodDescriptionfinal floatReturns the angle in radians between this vector and the vector parameter; the return value is constrained to the range [0,PI].static voidMeasure.calcBestAxisThroughPoints(P3[] points, int nPoints, P3 axisA, V3 axisUnitVector, V3 vectorProjection, int nTriesMax) static floatstatic floatMeasure.distanceToPlaneV(V3 norm, float w, P3 pt) voidEigen.fillFloatArrays(V3[] eigenVectors, float[] eigenValues) Specifically for 3x3 systems, returns eigenVectors as V3[3] and values as float[3]; sorted from smallest to largest value.static floatQuat.get3dProjection(V3 v3d) static voidstatic floatstatic P3Calculate the intersection of a line with a plane.Quat.getNormalDirected(V3 v0) static booleanMeasure.getNormalFromCenter(P3 ptCenter, P3 ptA, P3 ptB, P3 ptC, boolean isOutward, V3 normal, V3 vTemp) static voidMeasure.getNormalToLine(P3 pointA, P3 pointB, V3 vNormNorm) static floatMeasure.getPlaneProjection(T3 pt, P4 plane, T3 retPtProj, V3 retNorm) Project a point onto a plane, also returning the normal vector and the directed distance to the plane.static voidMeasure.getPlaneThroughPoint(T3 pt, V3 normal, P4 plane) static P4static P3[]Measure.getProjectedLineSegment(P3[] points, int nPoints, P3 ptA, V3 unitVector, V3 vTemp) static final QuatQuat.getQuaternionFrameV(V3 vA, V3 vB, V3 vC, boolean yBased) Create a quaternion based on a framefloatQuat.getThetaDirectedV(V3 vector) static booleanMeasure.isInTetrahedron(P3 pt, P3 ptA, P3 ptB, P3 ptC, P3 ptD, P4 plane, V3 vTemp, V3 vTemp2, boolean fullyEnclosed) static booleanstatic A4Constructs and initializes an AxisAngle4f from the specified axis and angle.static floatMeasure.projectOntoAxis(P3 pt, P3 ptA, V3 axisUnitVector, V3 vectorProjection) project point onto a line containing ptA and having axis unitVector axisUnitVector, returning the result in point and a vector from ptA to pt in vectorProjectionfinal voidSets the value of this AxisAngle4f to the specified axis and angle. -
Uses of V3 in org.jmol.adapter.smarter
Fields in org.jmol.adapter.smarter declared as V3Methods in org.jmol.adapter.smarter that return V3Modifier and TypeMethodDescriptionAtomSetCollection.addVibrationVector(int iatom, float x, float y, float z) protected V3[]AtomSetCollectionReader.read3Vectors(boolean isBohr) read three vectors, as for unit cube definitions allows for non-numeric data preceding the number blockV3[]XtalSymmetry.FileSymmetry.rotateAxes(int iop, V3[] axes, P3 ptTemp, M3 mTemp) Methods in org.jmol.adapter.smarter with parameters of type V3Modifier and TypeMethodDescriptionV3[]XtalSymmetry.FileSymmetry.rotateAxes(int iop, V3[] axes, P3 ptTemp, M3 mTemp) -
Uses of V3 in org.jmol.api
Methods in org.jmol.api that return V3Modifier and TypeMethodDescriptionabstract V3JmolViewer.getBoundBoxCornerVector()JmolModulationSet.getV3()JmolAdapterAtomIterator.getVib()Methods in org.jmol.api with parameters of type V3Modifier and TypeMethodDescriptionfloatJmolNMRInterface.getDipolarCouplingHz(Atom a1, Atom a2, V3 vField) voidJmolNavigatorInterface.navigateAxis(V3 rotAxis, float degrees) -
Uses of V3 in org.jmol.export
Fields in org.jmol.export declared as V3 -
Uses of V3 in org.jmol.jvxl.api
Methods in org.jmol.jvxl.api with parameters of type V3Modifier and TypeMethodDescriptionintVertexDataServer.getSurfacePointIndexAndFraction(float cutoff, boolean isCutoffAbsolute, int x, int y, int z, P3i offset, int vertexA, int vertexB, float valueA, float valueB, T3 pointA, V3 edgeVector, boolean isContourType, float[] fReturn) getSurfacePointIndex is used by the Marching Cubes algorithm and must return a unique integer identifier for a vertex created by the Marching Cube algorithm when it finds an edge. -
Uses of V3 in org.jmol.jvxl.calc
Fields in org.jmol.jvxl.calc declared as V3Modifier and TypeFieldDescriptionprotected static final V3[]MarchingCubes.cubeVertexVectorsprotected final V3[]MarchingCubes.edgeVectorsprotected final V3[]MarchingCubes.voxelVertexVectors -
Uses of V3 in org.jmol.jvxl.data
Fields in org.jmol.jvxl.data declared as V3Modifier and TypeFieldDescriptionV3[]VolumeData.oabcfinal V3[]VolumeData.unitVolumetricVectorsfinal V3[]VolumeData.volumetricVectorsMethods in org.jmol.jvxl.data with parameters of type V3 -
Uses of V3 in org.jmol.jvxl.readers
Fields in org.jmol.jvxl.readers declared as V3Methods in org.jmol.jvxl.readers that return V3Methods in org.jmol.jvxl.readers with parameters of type V3Modifier and TypeMethodDescriptionprotected floatSurfaceReader.getSPF(float cutoff, boolean isCutoffAbsolute, float valueA, float valueB, T3 pointA, V3 edgeVector, int x, int y, int z, int vA, int vB, float[] fReturn, T3 ptReturn) protected floatJvxlXmlReader.getSurfacePointAndFraction(float cutoff, boolean isCutoffAbsolute, float valueA, float valueB, T3 pointA, V3 edgeVector, int x, int y, int z, int vA, int vB, float[] fReturn, T3 ptReturn) protected floatSurfaceReader.getSurfacePointAndFraction(float cutoff, boolean isCutoffAbsolute, float valueA, float valueB, T3 pointA, V3 edgeVector, int x, int y, int z, int vA, int vB, float[] fReturn, T3 ptReturn) intSurfaceReader.getSurfacePointIndexAndFraction(float cutoff, boolean isCutoffAbsolute, int x, int y, int z, P3i offset, int vA, int vB, float valueA, float valueB, T3 pointA, V3 edgeVector, boolean isContourType, float[] fReturn) -
Uses of V3 in org.jmol.modelset
Fields in org.jmol.modelset declared as V3Methods in org.jmol.modelset that return V3Modifier and TypeMethodDescriptionModelSet.calculateMolecularDipole(int modelIndex, BS bsAtoms) ModelSet.getBoundBoxCornerVector()ModelSet.getModelDipole(int modelIndex) Methods in org.jmol.modelset with parameters of type V3Modifier and TypeMethodDescriptionModelSet.addAtom(int modelIndex, Group group, int atomicAndIsotopeNumber, String atomName, String atomType, int atomSerial, int atomSeqID, int atomSite, P3 xyz, float radius, V3 vib, int formalCharge, float partialCharge, float occupancy, float bfactor, Lst<Object> tensors, boolean isHetero, boolean isNegDisorder, byte specialAtomID, BS atomSymmetry, float bondRadius) AtomCollection.getHybridizationAndAxes(int atomIndex, int atomicNumber, V3 z, V3 x, String lcaoTypeRaw, boolean hybridizationCompatible, boolean doAlignZ, boolean isQuick, T3 ref) voidModelSet.moveAtoms(M4 m4, M3 mNew, M3 rotation, V3 translation, BS bs, P3 center, boolean isInternal, boolean translationOnly) -
Uses of V3 in org.jmol.modelsetbio
Fields in org.jmol.modelsetbio declared as V3Modifier and TypeFieldDescriptionprotected V3ProteinStructure.axisUnitVectorprotected V3ProteinStructure.vectorProjectionprotected V3[]BioPolymer.wingVectorsMethods in org.jmol.modelsetbio that return V3Methods in org.jmol.modelsetbio with parameters of type V3Modifier and TypeMethodDescriptionprotected P3AlphaPolymer.getControlPoint(int i, V3 v) protected P3BioPolymer.getControlPoint(int i, V3 v) booleanAminoMonomer.getNHPoint(P3 aminoHydrogenPoint, V3 vNH, boolean jmolHPoint, boolean dsspIgnoreHydrogens) void -
Uses of V3 in org.jmol.quantum
Methods in org.jmol.quantum with parameters of type V3Modifier and TypeMethodDescriptionfloatNMRCalculation.getDipolarCouplingHz(Atom a1, Atom a2, V3 vField) -
Uses of V3 in org.jmol.render
Fields in org.jmol.render declared as V3 -
Uses of V3 in org.jmol.renderbio
Fields in org.jmol.renderbio declared as V3Modifier and TypeFieldDescriptionprotected V3[]BioShapeRenderer.wingVectorsprotected V3[]BioShapeRenderer.wingVectorsprotected V3[]BioShapeRenderer.wingVectorsprotected V3[]BioShapeRenderer.wingVectorsprotected V3[]BioShapeRenderer.wingVectorsprotected V3[]BioShapeRenderer.wingVectorsprotected V3[]BioShapeRenderer.wingVectors -
Uses of V3 in org.jmol.renderspecial
Fields in org.jmol.renderspecial declared as V3 -
Uses of V3 in org.jmol.script
Methods in org.jmol.script with parameters of type V3 -
Uses of V3 in org.jmol.shape
Fields in org.jmol.shape declared as V3Methods in org.jmol.shape that return V3Modifier and TypeMethodDescriptionV3[]Mesh.getNormals(T3[] vertices, P4 plane) V3[]Mesh.getNormalsTemp()Methods in org.jmol.shape with parameters of type V3Modifier and TypeMethodDescriptionshort[]Mesh.setNormixes(V3[] normals) protected voidMesh.sumVertexNormals(T3[] vertices, V3[] normals) protected static voidMesh.sumVertexNormals2(Mesh m, T3[] vertices, V3[] normals) -
Uses of V3 in org.jmol.shapebio
Fields in org.jmol.shapebio declared as V3 -
Uses of V3 in org.jmol.shapespecial
Fields in org.jmol.shapespecial declared as V3Methods in org.jmol.shapespecial with parameters of type V3Modifier and TypeMethodDescriptionstatic voidEllipsoid.getEquationForQuadricWithCenter(float x, float y, float z, M3 mToElliptical, V3 vTemp, M3 mTemp, double[] coef, M4 mDeriv) -
Uses of V3 in org.jmol.shapesurface
Methods in org.jmol.shapesurface with parameters of type V3Modifier and TypeMethodDescriptionintIsosurface.getSurfacePointIndexAndFraction(float cutoff, boolean isCutoffAbsolute, int x, int y, int z, P3i offset, int vA, int vB, float valueA, float valueB, T3 pointA, V3 edgeVector, boolean isContourType, float[] fReturn) ////////// VertexDataServer interface methods ////////////////protected voidIsosurfaceMesh.sumVertexNormals(T3[] vertices, V3[] vectorSums) -
Uses of V3 in org.jmol.symmetry
Fields in org.jmol.symmetry declared as V3Methods in org.jmol.symmetry that return V3Modifier and TypeMethodDescriptionSymmetryOperation.getOpAxis()SymmetryOperation.getOpTrans()V3[]SymmetryOperation.rotateAxes(V3[] vectors, UnitCell unitcell, P3 ptTemp, M3 mTemp) Methods in org.jmol.symmetry with parameters of type V3Modifier and TypeMethodDescriptionstatic voidSymmetryOperation.normalize12ths(V3 vtrans) V3[]SymmetryOperation.rotateAxes(V3[] vectors, UnitCell unitcell, P3 ptTemp, M3 mTemp) -
Uses of V3 in org.jmol.util
Subclasses of V3 in org.jmol.utilModifier and TypeClassDescriptionclassA class to group a set of modulations for an atom as a "vibration" Extends V3 so that it will be a displacement, and its value will be an occupancyclassA class to allow for more complex vibrations and associated phenomena, such as modulated crystals.Fields in org.jmol.util declared as V3Modifier and TypeFieldDescriptionV3[]Tensor.eigenVectorsModulationSet.mxyzthe modulated magnetic spinV3[]MeshSurface.normalsTempV3[]MeshSurface.oabcprotected V3[]GData.transformedVectorsVibration.v0Methods in org.jmol.util that return V3Modifier and TypeMethodDescriptionBoxInfo.getBoundBoxCornerVector()GData.getLightSource()V3[]GData.getTransformedVertexVectors()ModulationSet.getV3()static V3Geodesic.getVertexVector(int i) static V3[]Geodesic.getVertexVectors()static V3[]Normix.getVertexVectors()Methods in org.jmol.util with parameters of type V3Modifier and TypeMethodDescriptionstatic voidSimpleUnitCell.fillParams(V3 va, V3 vb, V3 vc, float[] p) static shortNormix.get2SidedNormix(V3 v, BS bsTemp) static shortNormix.getNormixV(V3 v, BS bsTemp) P3[]Triangulator.intersectLine(P3[] points, int nPoints, P3 ptA, V3 unitVector) Tensor.setFromAxes(V3[] axes) Standard constructor for ellipsoids based on axes -
Uses of V3 in org.jmol.viewer
Fields in org.jmol.viewer declared as V3Modifier and TypeFieldDescriptionstatic final V3JC.axisNXstatic final V3JC.axisNYstatic final V3JC.axisNZstatic final V3JC.axisXstatic final V3JC.axisYstatic final V3JC.axisZstatic final V3JC.centerprotected V3TransformManager.internalTranslationstatic final V3[]protected final V3TransformManager.vectorTempMethods in org.jmol.viewer that return V3Modifier and TypeMethodDescriptionViewer.calculateMolecularDipole(BS bsAtoms) Viewer.getBoundBoxCornerVector()Viewer.getModelDipole()Methods in org.jmol.viewer with parameters of type V3Modifier and TypeMethodDescriptionViewer.getHybridizationAndAxes(int atomIndex, V3 z, V3 x, String lcaoType) booleanTransformManager.isInPosition(V3 axis, float degrees) voidViewer.move(JmolScriptEvaluator eval, V3 dRot, float dZoom, V3 dTrans, float dSlab, float floatSecondsTotal, int fps) voidViewer.moveAtoms(M4 m4, M3 mNew, M3 rotation, V3 translation, P3 center, boolean isInternal, BS bsAtoms, boolean translationOnly, boolean useModelKit) voidViewer.moveTo(JmolScriptEvaluator eval, float floatSecondsTotal, P3 center, V3 rotAxis, float degrees, M3 rotationMatrix, float zoom, float xTrans, float yTrans, float rotationRadius, P3 navCenter, float xNav, float yNav, float navDepth, float cameraDepth, float cameraX, float cameraY) voidTransformManager.navigateAxis(V3 rotAxis, float degrees) scripted entry point for navigationvoidViewer.navigateAxis(V3 rotAxis, float degrees) booleanViewer.rotateAboutPointsInternal(JmolScriptEvaluator eval, P3 point1, P3 point2, float degreesPerSecond, float endDegrees, boolean isSpin, BS bsSelected, V3 translation, Lst<P3> finalPoints, float[] dihedralList, M3 vectorMatrix, M4 m4, boolean useModelKit, P3[][] centerAndPoints) voidTransformManager.rotateAxisAngle(V3 rotAxis, float radians) booleanViewer.rotateAxisAngleAtCenter(JmolScriptEvaluator eval, P3 rotCenter, V3 rotAxis, float degreesPerSecond, float endDegrees, boolean isSpin, BS bsSelected) -
Uses of V3 in org.openscience.jvxl.simplewriter
Methods in org.openscience.jvxl.simplewriter with parameters of type V3